From d53194c34a28576ce5023ba2c4ea89443d107930 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Daniel=20G=C3=B6bel?= <dgoebel@techfak.uni-bielefeld.de>
Date: Wed, 6 Dec 2023 12:06:19 +0100
Subject: [PATCH] Show logs s3 path in parameter modal
* Add download button for parameters
* Fix popup window problem when downloading files
#86
---
package-lock.json | 1246 +++++++++--------
.../workflow/models/DevWorkflowExecutionIn.ts | 12 +-
.../workflow/models/WorkflowExecutionIn.ts | 12 +-
.../workflow/models/WorkflowExecutionOut.ts | 12 +
.../ParameterSchemaFormComponent.vue | 62 +-
.../form-mode/ParameterStringInput.vue | 2 +-
.../workflows/modals/ParameterModal.vue | 116 +-
src/views/object-storage/BucketView.vue | 2 +-
src/views/workflows/ArbitraryWorkflowView.vue | 10 +-
src/views/workflows/StartWorkflowView.vue | 12 +-
10 files changed, 823 insertions(+), 663 deletions(-)
diff --git a/package-lock.json b/package-lock.json
index d7f82cb..52d5178 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -202,34 +202,34 @@
"integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg=="
},
"node_modules/@aws-sdk/client-s3": {
- "version": "3.454.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.454.0.tgz",
- "integrity": "sha512-vBx4iB1c4mEz+twMnl6angC1/IpnmXaT8L6Kl9uNiurFsb6N4tCyrJ24kECdsOSTM7ePXvE1fKst8zAh6MW5ZA==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.465.0.tgz",
+ "integrity": "sha512-S2W8aUs/SR7wabyKRldl5FKtAq2gsXo3BpbKjBvuCILwNl84ooQrsOmKtcVsINRdi+q/mZvwGenqqp/98+yjdg==",
"dependencies": {
"@aws-crypto/sha1-browser": "3.0.0",
"@aws-crypto/sha256-browser": "3.0.0",
"@aws-crypto/sha256-js": "3.0.0",
- "@aws-sdk/client-sts": "3.454.0",
- "@aws-sdk/core": "3.451.0",
- "@aws-sdk/credential-provider-node": "3.451.0",
- "@aws-sdk/middleware-bucket-endpoint": "3.451.0",
- "@aws-sdk/middleware-expect-continue": "3.451.0",
- "@aws-sdk/middleware-flexible-checksums": "3.451.0",
- "@aws-sdk/middleware-host-header": "3.451.0",
- "@aws-sdk/middleware-location-constraint": "3.451.0",
- "@aws-sdk/middleware-logger": "3.451.0",
- "@aws-sdk/middleware-recursion-detection": "3.451.0",
- "@aws-sdk/middleware-sdk-s3": "3.451.0",
- "@aws-sdk/middleware-signing": "3.451.0",
- "@aws-sdk/middleware-ssec": "3.451.0",
- "@aws-sdk/middleware-user-agent": "3.451.0",
- "@aws-sdk/region-config-resolver": "3.451.0",
- "@aws-sdk/signature-v4-multi-region": "3.451.0",
- "@aws-sdk/types": "3.451.0",
- "@aws-sdk/util-endpoints": "3.451.0",
- "@aws-sdk/util-user-agent-browser": "3.451.0",
- "@aws-sdk/util-user-agent-node": "3.451.0",
- "@aws-sdk/xml-builder": "3.310.0",
+ "@aws-sdk/client-sts": "3.465.0",
+ "@aws-sdk/core": "3.465.0",
+ "@aws-sdk/credential-provider-node": "3.465.0",
+ "@aws-sdk/middleware-bucket-endpoint": "3.465.0",
+ "@aws-sdk/middleware-expect-continue": "3.465.0",
+ "@aws-sdk/middleware-flexible-checksums": "3.465.0",
+ "@aws-sdk/middleware-host-header": "3.465.0",
+ "@aws-sdk/middleware-location-constraint": "3.465.0",
+ "@aws-sdk/middleware-logger": "3.465.0",
+ "@aws-sdk/middleware-recursion-detection": "3.465.0",
+ "@aws-sdk/middleware-sdk-s3": "3.465.0",
+ "@aws-sdk/middleware-signing": "3.465.0",
+ "@aws-sdk/middleware-ssec": "3.465.0",
+ "@aws-sdk/middleware-user-agent": "3.465.0",
+ "@aws-sdk/region-config-resolver": "3.465.0",
+ "@aws-sdk/signature-v4-multi-region": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
+ "@aws-sdk/util-endpoints": "3.465.0",
+ "@aws-sdk/util-user-agent-browser": "3.465.0",
+ "@aws-sdk/util-user-agent-node": "3.465.0",
+ "@aws-sdk/xml-builder": "3.465.0",
"@smithy/config-resolver": "^2.0.18",
"@smithy/eventstream-serde-browser": "^2.0.13",
"@smithy/eventstream-serde-config-resolver": "^2.0.13",
@@ -269,22 +269,22 @@
}
},
"node_modules/@aws-sdk/client-sso": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/client-sso/-/client-sso-3.451.0.tgz",
- "integrity": "sha512-KkYSke3Pdv3MfVH/5fT528+MKjMyPKlcLcd4zQb0x6/7Bl7EHrPh1JZYjzPLHelb+UY5X0qN8+cb8iSu1eiwIQ==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/client-sso/-/client-sso-3.465.0.tgz",
+ "integrity": "sha512-JXDBa3Sl+LS0KEOs0PZoIjpNKEEGfeyFwdnRxi8Y1hMXNEKyJug1cI2Psqu2olpn4KeXwoP1BuITppZYdolOew==",
"dependencies": {
"@aws-crypto/sha256-browser": "3.0.0",
"@aws-crypto/sha256-js": "3.0.0",
- "@aws-sdk/core": "3.451.0",
- "@aws-sdk/middleware-host-header": "3.451.0",
- "@aws-sdk/middleware-logger": "3.451.0",
- "@aws-sdk/middleware-recursion-detection": "3.451.0",
- "@aws-sdk/middleware-user-agent": "3.451.0",
- "@aws-sdk/region-config-resolver": "3.451.0",
- "@aws-sdk/types": "3.451.0",
- "@aws-sdk/util-endpoints": "3.451.0",
- "@aws-sdk/util-user-agent-browser": "3.451.0",
- "@aws-sdk/util-user-agent-node": "3.451.0",
+ "@aws-sdk/core": "3.465.0",
+ "@aws-sdk/middleware-host-header": "3.465.0",
+ "@aws-sdk/middleware-logger": "3.465.0",
+ "@aws-sdk/middleware-recursion-detection": "3.465.0",
+ "@aws-sdk/middleware-user-agent": "3.465.0",
+ "@aws-sdk/region-config-resolver": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
+ "@aws-sdk/util-endpoints": "3.465.0",
+ "@aws-sdk/util-user-agent-browser": "3.465.0",
+ "@aws-sdk/util-user-agent-node": "3.465.0",
"@smithy/config-resolver": "^2.0.18",
"@smithy/fetch-http-handler": "^2.2.6",
"@smithy/hash-node": "^2.0.15",
@@ -315,25 +315,25 @@
}
},
"node_modules/@aws-sdk/client-sts": {
- "version": "3.454.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.454.0.tgz",
- "integrity": "sha512-0fDvr8WeB6IYO8BUCzcivWmahgGl/zDbaYfakzGnt4mrl5ztYaXE875WI6b7+oFcKMRvN+KLvwu5TtyFuNY+GQ==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.465.0.tgz",
+ "integrity": "sha512-rHi9ba6ssNbVjlWSdhi4C5newEhGhzkY9UE4KB+/Tj21zXfEP8r6uIltnQXPtun2SdA95Krh/yS1qQ4MRuzqyA==",
"dependencies": {
"@aws-crypto/sha256-browser": "3.0.0",
"@aws-crypto/sha256-js": "3.0.0",
- "@aws-sdk/core": "3.451.0",
- "@aws-sdk/credential-provider-node": "3.451.0",
- "@aws-sdk/middleware-host-header": "3.451.0",
- "@aws-sdk/middleware-logger": "3.451.0",
- "@aws-sdk/middleware-recursion-detection": "3.451.0",
- "@aws-sdk/middleware-sdk-sts": "3.451.0",
- "@aws-sdk/middleware-signing": "3.451.0",
- "@aws-sdk/middleware-user-agent": "3.451.0",
- "@aws-sdk/region-config-resolver": "3.451.0",
- "@aws-sdk/types": "3.451.0",
- "@aws-sdk/util-endpoints": "3.451.0",
- "@aws-sdk/util-user-agent-browser": "3.451.0",
- "@aws-sdk/util-user-agent-node": "3.451.0",
+ "@aws-sdk/core": "3.465.0",
+ "@aws-sdk/credential-provider-node": "3.465.0",
+ "@aws-sdk/middleware-host-header": "3.465.0",
+ "@aws-sdk/middleware-logger": "3.465.0",
+ "@aws-sdk/middleware-recursion-detection": "3.465.0",
+ "@aws-sdk/middleware-sdk-sts": "3.465.0",
+ "@aws-sdk/middleware-signing": "3.465.0",
+ "@aws-sdk/middleware-user-agent": "3.465.0",
+ "@aws-sdk/region-config-resolver": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
+ "@aws-sdk/util-endpoints": "3.465.0",
+ "@aws-sdk/util-user-agent-browser": "3.465.0",
+ "@aws-sdk/util-user-agent-node": "3.465.0",
"@smithy/config-resolver": "^2.0.18",
"@smithy/fetch-http-handler": "^2.2.6",
"@smithy/hash-node": "^2.0.15",
@@ -365,9 +365,9 @@
}
},
"node_modules/@aws-sdk/core": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/core/-/core-3.451.0.tgz",
- "integrity": "sha512-SamWW2zHEf1ZKe3j1w0Piauryl8BQIlej0TBS18A4ACzhjhWXhCs13bO1S88LvPR5mBFXok3XOT6zPOnKDFktw==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/core/-/core-3.465.0.tgz",
+ "integrity": "sha512-fHSIw/Rgex3KbrEKn6ZrUc2VcsOTpdBMeyYtfmsTOLSyDDOG9k3jelOvVbCbrK5N6uEUSM8hrnySEKg94UB0cg==",
"dependencies": {
"@smithy/smithy-client": "^2.1.15",
"tslib": "^2.5.0"
@@ -377,11 +377,11 @@
}
},
"node_modules/@aws-sdk/credential-provider-env": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-env/-/credential-provider-env-3.451.0.tgz",
- "integrity": "sha512-9dAav7DcRgaF7xCJEQR5ER9ErXxnu/tdnVJ+UPmb1NPeIZdESv1A3lxFDEq1Fs8c4/lzAj9BpshGyJVIZwZDKg==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-env/-/credential-provider-env-3.465.0.tgz",
+ "integrity": "sha512-fku37AgkB9KhCuWHE6mfvbWYU0X84Df6MQ60nYH7s/PiNEhkX2cVI6X6kOKjP1MNIwRcYt+oQDvplVKdHume+A==",
"dependencies": {
- "@aws-sdk/types": "3.451.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/types": "^2.5.0",
"tslib": "^2.5.0"
@@ -391,15 +391,15 @@
}
},
"node_modules/@aws-sdk/credential-provider-ini": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-ini/-/credential-provider-ini-3.451.0.tgz",
- "integrity": "sha512-TySt64Ci5/ZbqFw1F9Z0FIGvYx5JSC9e6gqDnizIYd8eMnn8wFRUscRrD7pIHKfrhvVKN5h0GdYovmMO/FMCBw==",
- "dependencies": {
- "@aws-sdk/credential-provider-env": "3.451.0",
- "@aws-sdk/credential-provider-process": "3.451.0",
- "@aws-sdk/credential-provider-sso": "3.451.0",
- "@aws-sdk/credential-provider-web-identity": "3.451.0",
- "@aws-sdk/types": "3.451.0",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-ini/-/credential-provider-ini-3.465.0.tgz",
+ "integrity": "sha512-B1MFufvdToAEMtfszilVnKer2S7P/OfMhkCizq2zuu8aU/CquRyHvKEQgWdvqunUDrFnVTc0kUZgsbBY0uPjLg==",
+ "dependencies": {
+ "@aws-sdk/credential-provider-env": "3.465.0",
+ "@aws-sdk/credential-provider-process": "3.465.0",
+ "@aws-sdk/credential-provider-sso": "3.465.0",
+ "@aws-sdk/credential-provider-web-identity": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/credential-provider-imds": "^2.0.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/shared-ini-file-loader": "^2.0.6",
@@ -411,16 +411,16 @@
}
},
"node_modules/@aws-sdk/credential-provider-node": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-node/-/credential-provider-node-3.451.0.tgz",
- "integrity": "sha512-AEwM1WPyxUdKrKyUsKyFqqRFGU70e4qlDyrtBxJnSU9NRLZI8tfEZ67bN7fHSxBUBODgDXpMSlSvJiBLh5/3pw==",
- "dependencies": {
- "@aws-sdk/credential-provider-env": "3.451.0",
- "@aws-sdk/credential-provider-ini": "3.451.0",
- "@aws-sdk/credential-provider-process": "3.451.0",
- "@aws-sdk/credential-provider-sso": "3.451.0",
- "@aws-sdk/credential-provider-web-identity": "3.451.0",
- "@aws-sdk/types": "3.451.0",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-node/-/credential-provider-node-3.465.0.tgz",
+ "integrity": "sha512-R3VA9yJ0BvezvrDxcgPTv9VHbVPbzchLTrX5jLFSVuW/lPPYLUi/Cjtyg9C9Y7qRfoQS4fNMvSRhwO5/TF68gA==",
+ "dependencies": {
+ "@aws-sdk/credential-provider-env": "3.465.0",
+ "@aws-sdk/credential-provider-ini": "3.465.0",
+ "@aws-sdk/credential-provider-process": "3.465.0",
+ "@aws-sdk/credential-provider-sso": "3.465.0",
+ "@aws-sdk/credential-provider-web-identity": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/credential-provider-imds": "^2.0.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/shared-ini-file-loader": "^2.0.6",
@@ -432,11 +432,11 @@
}
},
"node_modules/@aws-sdk/credential-provider-process": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-process/-/credential-provider-process-3.451.0.tgz",
- "integrity": "sha512-HQywSdKeD5PErcLLnZfSyCJO+6T+ZyzF+Lm/QgscSC+CbSUSIPi//s15qhBRVely/3KBV6AywxwNH+5eYgt4lQ==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-process/-/credential-provider-process-3.465.0.tgz",
+ "integrity": "sha512-YE6ZrRYwvb8969hWQnr4uvOJ8RU0JrNsk3vWTe/czly37ioZUEhi8jmpQp4f2mX/6U6buoFGWu5Se3VCdw2SFQ==",
"dependencies": {
- "@aws-sdk/types": "3.451.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/shared-ini-file-loader": "^2.0.6",
"@smithy/types": "^2.5.0",
@@ -447,13 +447,13 @@
}
},
"node_modules/@aws-sdk/credential-provider-sso": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-sso/-/credential-provider-sso-3.451.0.tgz",
- "integrity": "sha512-Usm/N51+unOt8ID4HnQzxIjUJDrkAQ1vyTOC0gSEEJ7h64NSSPGD5yhN7il5WcErtRd3EEtT1a8/GTC5TdBctg==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-sso/-/credential-provider-sso-3.465.0.tgz",
+ "integrity": "sha512-tLIP/4JQIJpn8yIg6RZRQ2nmvj5i4wLZvYvY4RtaFv2JrQUkmmTfyOZJuOBrIFRwJjx0fHmFu8DJjcOhMzllIQ==",
"dependencies": {
- "@aws-sdk/client-sso": "3.451.0",
- "@aws-sdk/token-providers": "3.451.0",
- "@aws-sdk/types": "3.451.0",
+ "@aws-sdk/client-sso": "3.465.0",
+ "@aws-sdk/token-providers": "3.465.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/shared-ini-file-loader": "^2.0.6",
"@smithy/types": "^2.5.0",
@@ -464,11 +464,11 @@
}
},
"node_modules/@aws-sdk/credential-provider-web-identity": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-web-identity/-/credential-provider-web-identity-3.451.0.tgz",
- "integrity": "sha512-Xtg3Qw65EfDjWNG7o2xD6sEmumPfsy3WDGjk2phEzVg8s7hcZGxf5wYwe6UY7RJvlEKrU0rFA+AMn6Hfj5oOzg==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/credential-provider-web-identity/-/credential-provider-web-identity-3.465.0.tgz",
+ "integrity": "sha512-B4Y75fMTZIniEU0yyqat+9NsQbYlXdqP5Y3bShkaG3pGLOHzF/xMlWuG+D3kkQ806PLYi+BgfVls4BcO+NyVcA==",
"dependencies": {
- "@aws-sdk/types": "3.451.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/property-provider": "^2.0.0",
"@smithy/types": "^2.5.0",
"tslib": "^2.5.0"
@@ -478,9 +478,9 @@
}
},
"node_modules/@aws-sdk/lib-storage": {
- "version": "3.454.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/lib-storage/-/lib-storage-3.454.0.tgz",
- "integrity": "sha512-UygsmdtIwty9GJqBoCqTQeX/dwE2Oo/m3P5UzuUr2veC6AEuYQyMIvmSgLVEO/ek3hfK86kmRBff7VTGWUuN8Q==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/lib-storage/-/lib-storage-3.465.0.tgz",
+ "integrity": "sha512-nsh8FgVw31N0GO6yiThg2I8yG0rRlpvnEm/MYQ8ETpmm2uq4inbup7eS8FxtfxhU6cGcJZu+YLeBwEdKrTSmvA==",
"dependencies": {
"@smithy/abort-controller": "^2.0.1",
"@smithy/middleware-endpoint": "^2.2.0",
@@ -498,12 +498,12 @@
}
},
"node_modules/@aws-sdk/middleware-bucket-endpoint": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-bucket-endpoint/-/middleware-bucket-endpoint-3.451.0.tgz",
- "integrity": "sha512-KWyZ1JGnYz2QbHuJtYTP1BVnMOfVopR8rP8dTinVb/JR5HfAYz4imICJlJUbOYRjN7wpA3PrRI8dNRjrSBjWJg==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-bucket-endpoint/-/middleware-bucket-endpoint-3.465.0.tgz",
+ "integrity": "sha512-cyIR9Nwyie6giLypuLSUmZF3O5GqVRwia3Nq1B/6/Ho0LccH0/HT2x/nM8fFcnskWSNGTVZVvZzSrVYXynTtjA==",
"dependencies": {
- "@aws-sdk/types": "3.451.0",
- "@aws-sdk/util-arn-parser": "3.310.0",
+ "@aws-sdk/types": "3.465.0",
+ "@aws-sdk/util-arn-parser": "3.465.0",
"@smithy/node-config-provider": "^2.1.5",
"@smithy/protocol-http": "^3.0.9",
"@smithy/types": "^2.5.0",
@@ -515,11 +515,11 @@
}
},
"node_modules/@aws-sdk/middleware-expect-continue": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-expect-continue/-/middleware-expect-continue-3.451.0.tgz",
- "integrity": "sha512-vwG8o2Uk6biLDlOZnqXemsO4dS2HvrprUdxyouwu6hlzLFskg8nL122butn19JqXJKgcVLuSSLzT+xwqBWy2Rg==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-expect-continue/-/middleware-expect-continue-3.465.0.tgz",
+ "integrity": "sha512-kthlPQDASsdtdVqKVKkJn9bHptcEpsQ6ptWeGBCYigicULvWI1fjSTeXrYczxNMVg+1Sv8xkb/bh+kUEu7mvZg==",
"dependencies": {
- "@aws-sdk/types": "3.451.0",
+ "@aws-sdk/types": "3.465.0",
"@smithy/protocol-http": "^3.0.9",
"@smithy/types": "^2.5.0",
"tslib": "^2.5.0"
@@ -529,13 +529,13 @@
}
},
"node_modules/@aws-sdk/middleware-flexible-checksums": {
- "version": "3.451.0",
- "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-flexible-checksums/-/middleware-flexible-checksums-3.451.0.tgz",
- "integrity": "sha512-eOkpcC2zgAvqs1w7Yp5nsk9LBIj6qLU5kaZuZEBOiFbNKIrTnPo6dQuhgvDcKHD6Y5W/cUjSBiFMs/ROb5aoug==",
+ "version": "3.465.0",
+ "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-flexible-checksums/-/middleware-flexible-checksums-3.465.0.tgz",
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+ "@aws-sdk/types": "3.465.0",
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+ "@aws-sdk/types": "3.465.0",
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/middleware-sdk-sts/-/middleware-sdk-sts-3.465.0.tgz",
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@@ -691,13 +694,13 @@
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@@ -709,11 +712,12 @@
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/signature-v4-multi-region/-/signature-v4-multi-region-3.465.0.tgz",
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@@ -724,21 +728,21 @@
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/token-providers/-/token-providers-3.465.0.tgz",
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@@ -783,9 +787,9 @@
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/util-arn-parser/-/util-arn-parser-3.465.0.tgz",
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/util-endpoints/-/util-endpoints-3.465.0.tgz",
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@@ -807,11 +811,11 @@
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+ "resolved": "https://registry.npmjs.org/@aws-sdk/util-format-url/-/util-format-url-3.465.0.tgz",
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@@ -821,9 +825,9 @@
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@@ -832,22 +836,22 @@
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@@ -1711,16 +1715,16 @@
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}
],
"dependencies": {
- "nanoid": "^3.3.6",
+ "nanoid": "^3.3.7",
"picocolors": "^1.0.0",
"source-map-js": "^1.0.2"
},
@@ -6313,13 +6319,13 @@
}
},
"node_modules/synckit": {
- "version": "0.8.5",
- "resolved": "https://registry.npmjs.org/synckit/-/synckit-0.8.5.tgz",
- "integrity": "sha512-L1dapNV6vu2s/4Sputv8xGsCdAVlb5nRDMFU/E27D44l5U6cw1g0dGd45uLc+OXjNMmF4ntiMdCimzcjFKQI8Q==",
+ "version": "0.8.6",
+ "resolved": "https://registry.npmjs.org/synckit/-/synckit-0.8.6.tgz",
+ "integrity": "sha512-laHF2savN6sMeHCjLRkheIU4wo3Zg9Ln5YOjOo7sZ5dVQW8yF5pPE5SIw1dsPhq3TRp1jisKRCdPhfs/1WMqDA==",
"dev": true,
"dependencies": {
- "@pkgr/utils": "^2.3.1",
- "tslib": "^2.5.0"
+ "@pkgr/utils": "^2.4.2",
+ "tslib": "^2.6.2"
},
"engines": {
"node": "^14.18.0 || >=16.0.0"
@@ -6564,9 +6570,9 @@
}
},
"node_modules/vite": {
- "version": "4.4.11",
- "resolved": "https://registry.npmjs.org/vite/-/vite-4.4.11.tgz",
- "integrity": "sha512-ksNZJlkcU9b0lBwAGZGGaZHCMqHsc8OpgtoYhsQ4/I2v5cnpmmmqe5pM4nv/4Hn6G/2GhTdj0DhZh2e+Er1q5A==",
+ "version": "4.4.12",
+ "resolved": "https://registry.npmjs.org/vite/-/vite-4.4.12.tgz",
+ "integrity": "sha512-KtPlUbWfxzGVul8Nut8Gw2Qe8sBzWY+8QVc5SL8iRFnpnrcoCaNlzO40c1R6hPmcdTwIPEDkq0Y9+27a5tVbdQ==",
"dev": true,
"dependencies": {
"esbuild": "^0.18.10",
@@ -7008,15 +7014,15 @@
}
},
"node_modules/vue": {
- "version": "3.3.8",
- "resolved": "https://registry.npmjs.org/vue/-/vue-3.3.8.tgz",
- "integrity": "sha512-5VSX/3DabBikOXMsxzlW8JyfeLKlG9mzqnWgLQLty88vdZL7ZJgrdgBOmrArwxiLtmS+lNNpPcBYqrhE6TQW5w==",
+ "version": "3.3.10",
+ "resolved": "https://registry.npmjs.org/vue/-/vue-3.3.10.tgz",
+ "integrity": "sha512-zg6SIXZdTBwiqCw/1p+m04VyHjLfwtjwz8N57sPaBhEex31ND0RYECVOC1YrRwMRmxFf5T1dabl6SGUbMKKuVw==",
"dependencies": {
- "@vue/compiler-dom": "3.3.8",
- "@vue/compiler-sfc": "3.3.8",
- "@vue/runtime-dom": "3.3.8",
- "@vue/server-renderer": "3.3.8",
- "@vue/shared": "3.3.8"
+ "@vue/compiler-dom": "3.3.10",
+ "@vue/compiler-sfc": "3.3.10",
+ "@vue/runtime-dom": "3.3.10",
+ "@vue/server-renderer": "3.3.10",
+ "@vue/shared": "3.3.10"
},
"peerDependencies": {
"typescript": "*"
@@ -7101,13 +7107,13 @@
}
},
"node_modules/vue-tsc": {
- "version": "1.8.22",
- "resolved": "https://registry.npmjs.org/vue-tsc/-/vue-tsc-1.8.22.tgz",
- "integrity": "sha512-j9P4kHtW6eEE08aS5McFZE/ivmipXy0JzrnTgbomfABMaVKx37kNBw//irL3+LlE3kOo63XpnRigyPC3w7+z+A==",
+ "version": "1.8.25",
+ "resolved": "https://registry.npmjs.org/vue-tsc/-/vue-tsc-1.8.25.tgz",
+ "integrity": "sha512-lHsRhDc/Y7LINvYhZ3pv4elflFADoEOo67vfClAfF2heVHpHmVquLSjojgCSIwzA4F0Pc4vowT/psXCYcfk+iQ==",
"dev": true,
"dependencies": {
- "@volar/typescript": "~1.10.5",
- "@vue/language-core": "1.8.22",
+ "@volar/typescript": "~1.11.1",
+ "@vue/language-core": "1.8.25",
"semver": "^7.5.4"
},
"bin": {
diff --git a/src/client/workflow/models/DevWorkflowExecutionIn.ts b/src/client/workflow/models/DevWorkflowExecutionIn.ts
index 65940ea..e8c8a52 100644
--- a/src/client/workflow/models/DevWorkflowExecutionIn.ts
+++ b/src/client/workflow/models/DevWorkflowExecutionIn.ts
@@ -11,13 +11,17 @@ export type DevWorkflowExecutionIn = {
*/
parameters: Record<string, any>;
/**
- * Bucket where to save logs and reports. If None, nothing will be uploaded.
+ * S3 Path where to save logs and reports. If None, nothing will be uploaded.
*/
- logs_bucket?: (string | null);
+ logs_s3_path?: (string | null);
/**
- * Bucket where to save debug information from nextflow. If None, nothing will be uploaded.
+ * S3 Path where to save provenance information. If None, nothing will be uploaded.
*/
- debug_bucket?: (string | null);
+ provenance_s3_path?: (string | null);
+ /**
+ * S3 Path where to save debug information from Nextflow. If None, nothing will be uploaded.
+ */
+ debug_s3_path?: (string | null);
/**
* Hash of the git commit
*/
diff --git a/src/client/workflow/models/WorkflowExecutionIn.ts b/src/client/workflow/models/WorkflowExecutionIn.ts
index 39135ae..3532aa8 100644
--- a/src/client/workflow/models/WorkflowExecutionIn.ts
+++ b/src/client/workflow/models/WorkflowExecutionIn.ts
@@ -9,13 +9,17 @@ export type WorkflowExecutionIn = {
*/
parameters: Record<string, any>;
/**
- * Bucket where to save logs and reports. If None, nothing will be uploaded.
+ * S3 Path where to save logs and reports. If None, nothing will be uploaded.
*/
- logs_bucket?: (string | null);
+ logs_s3_path?: (string | null);
/**
- * Bucket where to save debug information from nextflow. If None, nothing will be uploaded.
+ * S3 Path where to save provenance information. If None, nothing will be uploaded.
*/
- debug_bucket?: (string | null);
+ provenance_s3_path?: (string | null);
+ /**
+ * S3 Path where to save debug information from Nextflow. If None, nothing will be uploaded.
+ */
+ debug_s3_path?: (string | null);
/**
* Workflow version git commit hash
*/
diff --git a/src/client/workflow/models/WorkflowExecutionOut.ts b/src/client/workflow/models/WorkflowExecutionOut.ts
index 885ef61..a804c6a 100644
--- a/src/client/workflow/models/WorkflowExecutionOut.ts
+++ b/src/client/workflow/models/WorkflowExecutionOut.ts
@@ -42,5 +42,17 @@ export type WorkflowExecutionOut = {
* Id of the workflow
*/
workflow_id?: (string | null);
+ /**
+ * S3 Path where logs and reports are saved.
+ */
+ logs_s3_path?: (string | null);
+ /**
+ * S3 Path where provenance information is saved.
+ */
+ provenance_s3_path?: (string | null);
+ /**
+ * S3 Path where debug information from Nextflow is saved.
+ */
+ debug_s3_path?: (string | null);
};
diff --git a/src/components/parameter-schema/ParameterSchemaFormComponent.vue b/src/components/parameter-schema/ParameterSchemaFormComponent.vue
index 57f8669..7546e8b 100644
--- a/src/components/parameter-schema/ParameterSchemaFormComponent.vue
+++ b/src/components/parameter-schema/ParameterSchemaFormComponent.vue
@@ -32,8 +32,9 @@ const emit = defineEmits<{
// eslint-disable-next-line @typescript-eslint/no-explicit-any
parameters: Record<string, any>,
notes?: string,
- logs_bucket?: string,
- debug_bucket?: string,
+ logs_s3_path?: string,
+ debug_s3_path?: string,
+ provenance_s3_path?: string,
): void;
}>();
@@ -66,16 +67,18 @@ const formState = reactive<{
formInput: Record<string, any>;
validated: boolean;
pipelineNotes: string;
- logs_bucket?: string;
- debug_bucket?: string;
+ logs_s3_path?: string;
+ debug_s3_path?: string;
+ provenance_s3_path?: string;
errorType?: string;
showHidden: boolean;
}>({
formInput: {},
validated: false,
pipelineNotes: "",
- logs_bucket: undefined,
- debug_bucket: undefined,
+ logs_s3_path: undefined,
+ debug_s3_path: undefined,
+ provenance_s3_path: undefined,
errorType: undefined,
showHidden: false,
});
@@ -160,8 +163,9 @@ function startWorkflow() {
"start-workflow",
realInput,
formState.pipelineNotes,
- formState.logs_bucket,
- formState.debug_bucket,
+ formState.logs_s3_path,
+ formState.debug_s3_path,
+ formState.provenance_s3_path,
);
}
} else {
@@ -261,37 +265,55 @@ onMounted(() => {
>
</template>
<div class="input-group">
- <span class="input-group-text" id="logsBucket">
- <font-awesome-icon class="me-2" icon="fa-solid fa-sticky-note" />
- <code>--logs_bucket</code>
+ <span class="input-group-text" id="logsS3Path">
+ <font-awesome-icon class="me-2" icon="fa-solid fa-folder" />
+ <code>--logs_s3_path</code>
</span>
<parameter-string-input
- parameter-name="logs_bucket"
- v-model="formState.logs_bucket"
+ parameter-name="logs_s3_path"
+ v-model="formState.logs_s3_path"
:parameter="{
format: 'directory-path',
type: 'string',
}"
/>
</div>
- <label class="mb-3" for="logsBucket">
+ <label class="mb-3" for="logsS3Path">
Directory in bucket where to save Nextflow log and reports
</label>
<div class="input-group">
- <span class="input-group-text" id="debugBucket">
- <font-awesome-icon class="me-2" icon="fa-solid fa-sticky-note" />
- <code>--debug_bucket</code>
+ <span class="input-group-text" id="provenanceS3Path">
+ <font-awesome-icon class="me-2" icon="fa-solid fa-folder" />
+ <code>--provenance_s3_path</code>
</span>
<parameter-string-input
- parameter-name="debug_bucket"
- v-model="formState.debug_bucket"
+ parameter-name="provenance_s3_path"
+ v-model="formState.provenance_s3_path"
:parameter="{
format: 'directory-path',
type: 'string',
}"
/>
</div>
- <label class="mb-3" for="debugBucket">
+ <label class="mb-3" for="provenanceS3Path">
+ Directory in bucket where to save provenance information about the
+ workflow execution
+ </label>
+ <div class="input-group">
+ <span class="input-group-text" id="debugS3Path">
+ <font-awesome-icon class="me-2" icon="fa-solid fa-folder" />
+ <code>--debug_s3_path</code>
+ </span>
+ <parameter-string-input
+ parameter-name="debug_s3_path"
+ v-model="formState.debug_s3_path"
+ :parameter="{
+ format: 'directory-path',
+ type: 'string',
+ }"
+ />
+ </div>
+ <label class="mb-3" for="debugS3Path">
Directory in bucket where to save debug information about the
workflow execution
</label>
diff --git a/src/components/parameter-schema/form-mode/ParameterStringInput.vue b/src/components/parameter-schema/form-mode/ParameterStringInput.vue
index cbfa064..0ba406b 100644
--- a/src/components/parameter-schema/form-mode/ParameterStringInput.vue
+++ b/src/components/parameter-schema/form-mode/ParameterStringInput.vue
@@ -116,7 +116,7 @@ function updateValue() {
"update:modelValue",
!s3Path.bucket && s3Path.key
? undefined
- : `s3://${s3Path.bucket}/${s3Path.key ?? ""}`,
+ : `s3://${s3Path.bucket}${s3Path.key ? "/" + s3Path.key : ""}`,
);
} else {
emit(
diff --git a/src/components/workflows/modals/ParameterModal.vue b/src/components/workflows/modals/ParameterModal.vue
index 36c328a..576746b 100644
--- a/src/components/workflows/modals/ParameterModal.vue
+++ b/src/components/workflows/modals/ParameterModal.vue
@@ -7,6 +7,7 @@ import { Modal } from "bootstrap";
import { useRouter } from "vue-router";
import FontAwesomeIcon from "@/components/FontAwesomeIcon.vue";
import { useWorkflowStore } from "@/stores/workflows";
+import type { WorkflowExecutionOut } from "@/client/workflow";
const workflowRepository = useWorkflowStore();
const executionRepository = useWorkflowExecutionStore();
@@ -27,6 +28,41 @@ const parameterState = reactive<{
error: false,
});
+const execution = computed<WorkflowExecutionOut | undefined>(() => {
+ if (props.executionId == undefined) {
+ return undefined;
+ }
+ return executionRepository.executionMapping[props.executionId] ?? undefined;
+});
+
+const logs_s3_path = computed<string | undefined>(
+ () => execution.value?.logs_s3_path ?? undefined,
+);
+const debug_s3_path = computed<string | undefined>(
+ () => execution.value?.debug_s3_path ?? undefined,
+);
+const provenance_s3_path = computed<string | undefined>(
+ () => execution.value?.provenance_s3_path ?? undefined,
+);
+
+// eslint-disable-next-line @typescript-eslint/no-explicit-any
+const parameters = computed<Record<string, any> | undefined>(() => {
+ if (props.executionId == undefined) {
+ return undefined;
+ }
+ return executionRepository.parameters[props.executionId] ?? undefined;
+});
+
+const parameterDownloadUrl = computed<string | undefined>(() => {
+ if (parameters.value == undefined) {
+ return undefined;
+ }
+ const blob = new Blob([JSON.stringify(parameters.value, undefined, 2)], {
+ type: "application/json",
+ });
+ return URL.createObjectURL(blob);
+});
+
const workflowName = computed<string>(() => {
if (props.executionId) {
const execution = executionRepository.executionMapping[props.executionId];
@@ -148,11 +184,61 @@ onMounted(() => {
</template>
<template v-else>
<tr
- v-for="(value, name) in executionRepository.parameters[
- props.executionId
- ]"
- :key="name"
+ v-if="logs_s3_path"
+ :class="{
+ 'border-bottom-thick': !debug_s3_path && !provenance_s3_path,
+ }"
+ >
+ <th scope="row" style="width: 10%" class="text-end">
+ <b>logs</b>
+ </th>
+ <td>
+ <router-link
+ :to="{
+ name: 'bucket',
+ params: getS3LinkParameters(logs_s3_path),
+ }"
+ @click.prevent="handleBucketLinkClick(logs_s3_path)"
+ >{{ logs_s3_path }}
+ </router-link>
+ </td>
+ </tr>
+ <tr
+ v-if="provenance_s3_path"
+ :class="{
+ 'border-bottom-thick': !debug_s3_path,
+ }"
>
+ <th scope="row" style="width: 10%" class="text-end">
+ <b>provenance</b>
+ </th>
+ <td>
+ <router-link
+ :to="{
+ name: 'bucket',
+ params: getS3LinkParameters(provenance_s3_path),
+ }"
+ @click.prevent="handleBucketLinkClick(provenance_s3_path)"
+ >{{ provenance_s3_path }}
+ </router-link>
+ </td>
+ </tr>
+ <tr v-if="debug_s3_path" class="border-bottom-thick">
+ <th scope="row" style="width: 10%" class="text-end">
+ <b>debug</b>
+ </th>
+ <td>
+ <router-link
+ :to="{
+ name: 'bucket',
+ params: getS3LinkParameters(debug_s3_path),
+ }"
+ @click.prevent="handleBucketLinkClick(debug_s3_path)"
+ >{{ debug_s3_path }}
+ </router-link>
+ </td>
+ </tr>
+ <tr v-for="(value, name) in parameters" :key="name">
<th scope="row" style="width: 10%" class="text-end">
<b>{{ name }}</b>
</th>
@@ -174,6 +260,22 @@ onMounted(() => {
</table>
</template>
<template v-slot:footer>
+ <a
+ class="btn btn-primary"
+ role="button"
+ :class="{
+ disabled: parameterState.loading || parameterState.error,
+ }"
+ :href="parameterDownloadUrl"
+ :download="
+ 'parameters-' + props.executionId?.replace(/-/g, '') + '.json'
+ "
+ :tabindex="parameterState.loading || parameterState.error ? -1 : 0"
+ :aria-disabled="parameterState.loading || parameterState.error"
+ >
+ <font-awesome-icon icon="fa-solid fa-download" class="me-1" />
+ Parameters</a
+ >
<button type="button" class="btn btn-secondary" data-bs-dismiss="modal">
Close
</button>
@@ -181,4 +283,8 @@ onMounted(() => {
</bootstrap-modal>
</template>
-<style scoped></style>
+<style scoped>
+.border-bottom-thick {
+ border-bottom: 3px var(--bs-border-style) var(--bs-border-color) !important;
+}
+</style>
diff --git a/src/views/object-storage/BucketView.vue b/src/views/object-storage/BucketView.vue
index badf054..b3bd376 100644
--- a/src/views/object-storage/BucketView.vue
+++ b/src/views/object-storage/BucketView.vue
@@ -388,7 +388,7 @@ async function downloadObject(bucket: string, key?: string) {
//creating an invisible element
const element = document.createElement("a");
element.setAttribute("href", url);
- element.setAttribute("target", "_blank");
+ element.setAttribute("download", "");
document.body.appendChild(element);
element.click();
document.body.removeChild(element);
diff --git a/src/views/workflows/ArbitraryWorkflowView.vue b/src/views/workflows/ArbitraryWorkflowView.vue
index 94a9e05..faedb73 100644
--- a/src/views/workflows/ArbitraryWorkflowView.vue
+++ b/src/views/workflows/ArbitraryWorkflowView.vue
@@ -94,8 +94,9 @@ function startWorkflow(
// eslint-disable-next-line @typescript-eslint/no-explicit-any
parameters: Record<string, any>,
notes?: string,
- logs_bucket?: string,
- debug_bucket?: string,
+ logs_s3_path?: string,
+ debug_s3_path?: string,
+ provenance_s3_path?: string,
) {
if (workflowState.workflow) {
errorToast?.hide();
@@ -104,8 +105,9 @@ function startWorkflow(
.startDevExecution({
git_commit_hash: workflowState.workflow.git_commit_hash,
parameters: parameters,
- logs_bucket: logs_bucket,
- debug_bucket: debug_bucket,
+ logs_s3_path: logs_s3_path ? logs_s3_path : undefined,
+ debug_s3_path: debug_s3_path ? debug_s3_path : undefined,
+ provenance_s3_path: provenance_s3_path ? provenance_s3_path : undefined,
repository_url: workflowState.workflow.repository_url,
token: workflowState.workflow.token ?? undefined,
mode:
diff --git a/src/views/workflows/StartWorkflowView.vue b/src/views/workflows/StartWorkflowView.vue
index a26e490..a8d84cb 100644
--- a/src/views/workflows/StartWorkflowView.vue
+++ b/src/views/workflows/StartWorkflowView.vue
@@ -64,8 +64,9 @@ function startWorkflow(
// eslint-disable-next-line @typescript-eslint/no-explicit-any
parameters: Record<string, any>,
notes?: string,
- logs_bucket?: string,
- debug_bucket?: string,
+ logs_s3_path?: string,
+ debug_s3_path?: string,
+ provenance_s3_path?: string,
) {
if (props.versionId) {
versionState.workflowExecutionError = undefined;
@@ -75,8 +76,11 @@ function startWorkflow(
workflow_version_id: props.versionId,
parameters: parameters,
notes: notes,
- logs_bucket: logs_bucket,
- debug_bucket: debug_bucket,
+ logs_s3_path: logs_s3_path?.length ?? 0 > 0 ? logs_s3_path : undefined,
+ debug_s3_path:
+ debug_s3_path?.length ?? 0 > 0 ? debug_s3_path : undefined,
+ provenance_s3_path:
+ provenance_s3_path?.length ?? 0 > 0 ? provenance_s3_path : undefined,
mode: props.workflowModeId,
})
.then(() => {
--
GitLab