- /experiments/scripts/CountCoreKmers.cpp
- /experiments/scripts/checkBLASTresCovs.py
- /experiments/scripts/compareAssemblyAndReadGraphGenes.py
- /experiments/scripts/compareBuscoGenes.py
- /experiments/scripts/compareCoreGenes.py
- /experiments/scripts/extractGFAseqs.py
- /experiments/scripts/extractProteinSeqs.py
- /experiments/scripts/getGeneSeqs.py
- /experiments/scripts/getReadLocations.py
- /experiments/scripts/getSibeliaZblocks.py
- /experiments/scripts/get_fastas_for_acc_list.py
- /experiments/scripts/makefile
- /experiments/scripts/plotCoreSizes.py
- /experiments/scripts/plotKmerFractionTable.py
- /experiments/scripts/plotMemUsage.py
- /experiments/scripts/plotResTable.py
- /experiments/scripts/plotRuntimes.py
- /experiments/scripts/plotVarDeltaMems.py
- /experiments/scripts/plotVarDeltaRuntimes.py
- /experiments/arabidopsis/genomeSequences/links.txt
- /experiments/arabidopsis/reads/filereport_read_run_PRJEB2457_tsv.txt
- /experiments/bifidobacteriumAnimalis/genomeSequences/accessions.txt
- /experiments/enterococcusFaecium/genomeSequences/accessions.txt
- /experiments/listeriaMonocytogenes/genomeSequences/accessions.txt
- /experiments/yersiniaPestis/genomeSequences/accessions.txt
- /experiments/Snakefile
- /experiments/config.yaml
- /test/BridgingTest.h
- /test/Bridging_unittest.cpp
- /test/CoreTest.h
- /test/Core_unittest.cpp
- /test/IO_unittest.cpp
- /test/IOtest.h
- /test/OutputSnippetsTestGraph1.bfg_colors
- /test/OutputSnippetsTestGraph1.gfa
- /test/OutputSnippetsTestGraph2.bfg_colors
- /test/OutputSnippetsTestGraph2.gfa
- /test/OutputSnippetsTestGraph3.bfg_colors
- /test/OutputSnippetsTestGraph3.gfa
- /test/OutputSnippetsTestGraph4.bfg_colors
- /test/OutputSnippetsTestGraph4.gfa
- /test/OutputSnippetsTestGraphSources1.txt
- /test/OutputSnippetsTestGraphSources2.txt
- /test/OutputSnippetsTestGraphSources3.txt
- /test/OutputSnippetsTestGraphSources4.txt
- /test/Test.fa
- /test/Test11_color1.fa
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- /test/Test_color7.fa
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- /test/Test_color9.fa
- /test/TraversalTest.h
- /test/Traversal_unittest.cpp
- /test/gtest_main.cpp
- /test/makefile
- /src/Bridging.cpp
- /src/Bridging.h
- /src/Core.cpp
- /src/Core.h
- /src/CoreInfo.h
- /src/Corer.cpp
- /src/IO.cpp
- /src/IO.h
- /src/TravTrack.h
- /src/Traversal.cpp
- /src/Traversal.h
- /src/makefile
- /.gitignore
- /README.md