Commit fa53693c authored by Tizian Schulz's avatar Tizian Schulz
Browse files

Added some wildcard constraints to properly incorporate read data

parent fda312b4
......@@ -158,9 +158,9 @@ rule createAssemblyList:
input:
getAssemblies
output:
temp("{sp}/{gtype}PangenomeList.txt")
# wildcard_constraints:
# gtype="[a-z,A,P,F,M]+"
temp("{sp}/a{gtype}PangenomeList.txt")
wildcard_constraints:
gtype="[a-z,A,P,F,M,G,W,S]+"
shell:
"ls -l {input} | tr -s ' ' | cut -d' ' -f9 > {output}"
......
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