- 01 Jul, 2021 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
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- 29 Jun, 2021 1 commit
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Tizian Schulz authored
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- 17 Dec, 2020 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
Exchanged recursive graph traversal procedure by an iterative one and started to adapt test of doSucBFS
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- 15 Dec, 2020 1 commit
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Tizian Schulz authored
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- 04 Nov, 2020 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
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- 27 Oct, 2020 1 commit
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Tizian Schulz authored
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- 26 Oct, 2020 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
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- 22 Oct, 2020 1 commit
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Tizian Schulz authored
Fixed two bugs in void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&), introduced two new parameters to make core snippet output optional and to specify an output graph prefix, adjusted tests and started to implement output graph construction
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- 15 Oct, 2020 1 commit
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Tizian Schulz authored
Fixed bug in void markCore(ColoredCDBG<CoreInfo>&, const uint32_t&, const uint32_t&) and finished testing
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- 14 Oct, 2020 1 commit
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Tizian Schulz authored
Finished implementation of first core output routine, started testing and detected a bug in void markCore(ColoredCDBG<CoreInfo>&, const uint32_t&, const uint32_t&)
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- 13 Oct, 2020 1 commit
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Tizian Schulz authored
Finished testing of void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&) and started to implement a first core output routine
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- 12 Oct, 2020 1 commit
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Tizian Schulz authored
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- 08 Oct, 2020 2 commits
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Tizian Schulz authored
Further testing of void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&), fixed a bug there and in void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&), const bool lCrTooFar(const size_t&, const list<pair<uint32_t, uint32_t>>&, const uint32_t&) and const bool rCrTooFar(const size_t&, const list<pair<uint32_t, uint32_t>>&, const uint32_t&) and adjusted tests if necessary
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Tizian Schulz authored
Finished testing of void markBrdg(const list<Path>&, const bool&), started testing of void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&) and fixed bugs in both functions
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- 06 Oct, 2020 1 commit
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Tizian Schulz authored
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- 05 Oct, 2020 1 commit
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Tizian Schulz authored
Finished testing of void expPredPths(priority_queue<Path, vector<Path>, const bool (*)(const Path&, const Path&)>&, const uint32_t&, list<Path>&) and const bool doPredBFS(const UnitigColorMap<CoreInfo>, const uint32_t, list<Path>&)
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- 16 Sep, 2020 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
Finished testing of void addDists(const list<Path>&, const bool&), const bool doSucBFS(const UnitigColorMap<CoreInfo>, const uint32_t, list<Path>&), const uint32_t findMinPthLen(const list<Path>&), started testing of void expPredPths(priority_queue<Path, vector<Path>, const bool (*)(const Path&, const Path&)>&, const uint32_t&, list<Path>&) and simplified code there
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- 15 Sep, 2020 1 commit
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Tizian Schulz authored
Finished testing of void expSucPths(priority_queue<Path>&, const uint32_t&, list<Path>&) and void addDists(const list<Path>&, const bool&) and fixed a bug there
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- 14 Sep, 2020 1 commit
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Tizian Schulz authored
Minor changes in test documentations and further testing of void expSucPths(priority_queue<Path>&, const uint32_t&, list<Path>&)
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- 10 Sep, 2020 1 commit
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Tizian Schulz authored
Changes in function const uint32_t getCoreDist(const neighborIterator<DataAccessor<CoreInfo>, DataStorage<CoreInfo>, false>&, const bool&) and adjusted corresponding tests
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- 09 Sep, 2020 1 commit
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Tizian Schulz authored
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- 08 Sep, 2020 1 commit
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Tizian Schulz authored
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- 03 Sep, 2020 1 commit
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Tizian Schulz authored
Minimal progress with testing of void expSucPths(priority_queue<Path>&, const uint32_t&, list<Path>&) and debugged tests for argument parser
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- 02 Sep, 2020 2 commits
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Tizian Schulz authored
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Tizian Schulz authored
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- 01 Sep, 2020 1 commit
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Tizian Schulz authored
Started testing of void expSucPths(priority_queue<Path>& queue, const uint32_t& dpth, list<Path>& res)
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- 31 Aug, 2020 1 commit
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Tizian Schulz authored
Added number of threads as a parameter and finished testing of const bool prioShrtst(const Path&, const Path&) and const uint32_t getCoreDist(const neighborIterator<DataAccessor<CoreInfo>, DataStorage<CoreInfo>, false>&, const bool&)
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- 26 Aug, 2020 1 commit
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Tizian Schulz authored
Finished implementation of BFS on predecessive unitigs and testing of const bool lCrTooFar(const size_t& ulen, const list<pair<uint32_t, uint32_t>>& coreList, const uint32_t& dlt) and const bool rCrTooFar(const size_t& ulen, const list<pair<uint32_t, uint32_t>>& coreList, const uint32_t& dlt)
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- 25 Aug, 2020 1 commit
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Tizian Schulz authored
Finished implementation of BFS on successive unitigs, changed representation of result paths and started implementation of BFS on predecessive unitigs
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- 24 Aug, 2020 1 commit
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Tizian Schulz authored
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- 19 Aug, 2020 1 commit
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Tizian Schulz authored
Finished implementation of function void detectBrdg(ColoredCDBG<CoreInfo>&, const uint32_t&), started to implement BFS on successive unitigs and some minor changes
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- 12 Aug, 2020 1 commit
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Tizian Schulz authored
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- 30 Jun, 2020 1 commit
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Tizian Schulz authored
Finished testing of core detection routine, fixed a bug in quorum check function and one allowing to search with a quorum of 0 and removed some unnecessary testing data
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- 29 Jun, 2020 1 commit
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Tizian Schulz authored
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- 15 Jun, 2020 1 commit
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Tizian Schulz authored
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