corer merge requestshttps://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests2022-01-05T12:09:39+01:00https://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests/5Added a preprocessing step for BUSCO analysis2022-01-05T12:09:39+01:00Tizian SchulzAdded a preprocessing step for BUSCO analysisA previously missing preprocessing step to produce multiple FASTA files of predicted genes' amino acid sequences is now also part of the workflow. FASTA files are needed as input for the BUSCO analysis.A previously missing preprocessing step to produce multiple FASTA files of predicted genes' amino acid sequences is now also part of the workflow. FASTA files are needed as input for the BUSCO analysis.Tizian SchulzTizian Schulzhttps://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests/4Workflow completed2021-12-08T10:06:31+01:00Tizian SchulzWorkflow completedThe workflow now comprises all steps from preprocessing up to the creation of all result files used for the tool's accompanying manuscript.The workflow now comprises all steps from preprocessing up to the creation of all result files used for the tool's accompanying manuscript.https://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests/3Added some wildcard constraints to properly incorporate read data2021-11-19T17:25:47+01:00Tizian SchulzAdded some wildcard constraints to properly incorporate read dataTizian SchulzTizian Schulzhttps://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests/2Removed download rules from workflow2021-11-18T18:01:47+01:00Tizian SchulzRemoved download rules from workflowSince downloading read data from ENA's ftp server caused some problems, workflow rules for downloading the input data have been removed.Since downloading read data from ENA's ftp server caused some problems, workflow rules for downloading the input data have been removed.Tizian SchulzTizian Schulzhttps://gitlab.ub.uni-bielefeld.de/gi/corer/-/merge_requests/1Workflow Extension2021-11-12T16:33:39+01:00Tizian SchulzWorkflow ExtensionThe snakemake workflow does now comprise all preprocessing steps necessary for performing the actual experiments starting with the download of all data sets.The snakemake workflow does now comprise all preprocessing steps necessary for performing the actual experiments starting with the download of all data sets.Tizian SchulzTizian Schulz