Commit 39ad9f2c authored by Daniel Doerr's avatar Daniel Doerr
Browse files

add lastz.scores

parent 4b23a08f
# (a LASTZ scoring set, created by "LASTZ --infer")
bad_score = X:-1323 # used for sub[X][*] and sub[*][X]
fill_score = -132 # used when sub[*][*] not otherwise defined
gap_open_penalty = 430
gap_extend_penalty = 32
A C G T
A 90 -120 -81 -119
C -120 100 -132 -81
G -81 -132 100 -120
T -119 -81 -120 90
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