Commits (2)
This software is a fork and extension of [Gecko3](https://bio.informatik.uni-jena.de/software/gecko3/), an open-source software for finding gene clusters. Besides improving a few things, it was extended to support structural similarity analysis by means of the local DCJ similarity. If you use this software, please cite:
    Diego P. Rubert, Fábio V. Martinez, Jens Stoye and Daniel Doerr
    [*Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants*](https://doi.org/???)
    [*Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants*](https://doi.org/10.1186/s12864-020-6609-x)
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Authors of this extension
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......@@ -10,7 +10,7 @@ version = "v3.1.dcj.4"
mainClassName = 'de.unijena.bioinf.gecko3.Gecko3'
applicationDefaultJvmArgs = ["-Xmx6G", "-XX:CompileThreshold=100", "-XX:MaxInlineSize=128"]
applicationDefaultJvmArgs = ["-Xmx6G", "-XX:CompileThreshold=100", "-XX:MaxInlineSize=128", "-Dawt.useSystemAAFontSettings=on"]
repositories {
mavenLocal()
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