Skip to content

GitLab

Explore

Sign in
Register

Primary navigation

Project

CloWM Backend
- Activity
- Members
- Labels
- Releases
- Container Registry
- Service Desk

Snippets Groups Projects

dadbebe4

Verified Commit dadbebe4 authored 9 months ago by Daniel Göbel

Downloads
- Patches
- Plain Diff

Use parameter file instead of CLI parameters for nextflow execution

#11

parent 7dd23fbd

No related branches found

No related tags found

1 merge request!11Resolve "Use parameter file for nextflow instead of CLI parameters"

Pipeline #53602 passed 9 months ago

Stage: lint

Stage: test

Changes 8
Pipelines 1

Hide whitespace changes

Inline Side-by-side

Showing

.pre-commit-config.yaml 1 addition, 1 deletion

.pre-commit-config.yaml
Dockerfile 1 addition, 1 deletion

Dockerfile
Dockerfile-Gunicorn 1 addition, 1 deletion

Dockerfile-Gunicorn
clowm/api/background/cluster.py 0 additions, 6 deletions

clowm/api/background/cluster.py
clowm/slurm/script_templates/nextflow_command.sh.tmpl 10 additions, 8 deletions

clowm/slurm/script_templates/nextflow_command.sh.tmpl
requirements-dev.txt 2 additions, 2 deletions

requirements-dev.txt
requirements.txt 1 addition, 1 deletion

requirements.txt
start_service_gunicorn.sh 1 addition, 1 deletion

start_service_gunicorn.sh

with 17 additions and 21 deletions

Loading

0% Loading or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment