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Merge branch 'feature/2-connect-to-cluster-via-slurm-rest-api' into 'development'
Resolve "Connect to cluster via Slurm REST API" Closes #11 and #2 See merge request cmg/clowm/clowm-workflow-service!10
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- .gitlab-ci.yml 5 additions, 2 deletions.gitlab-ci.yml
- README.md 26 additions, 20 deletionsREADME.md
- app/api/dependencies.py 5 additions, 0 deletionsapp/api/dependencies.py
- app/api/endpoints/workflow_execution.py 34 additions, 0 deletionsapp/api/endpoints/workflow_execution.py
- app/api/utils.py 29 additions, 7 deletionsapp/api/utils.py
- app/core/config.py 11 additions, 0 deletionsapp/core/config.py
- app/crud/crud_workflow_execution.py 17 additions, 0 deletionsapp/crud/crud_workflow_execution.py
- app/git_repository/abstract_repository.py 15 additions, 0 deletionsapp/git_repository/abstract_repository.py
- app/git_repository/github.py 13 additions, 0 deletionsapp/git_repository/github.py
- app/git_repository/gitlab.py 14 additions, 1 deletionapp/git_repository/gitlab.py
- app/main.py 0 additions, 6 deletionsapp/main.py
- app/slurm/__init__.py 0 additions, 0 deletionsapp/slurm/__init__.py
- app/slurm/slurm_rest_client.py 63 additions, 0 deletionsapp/slurm/slurm_rest_client.py
- app/tests/api/test_workflow_execution.py 85 additions, 2 deletionsapp/tests/api/test_workflow_execution.py
- app/tests/conftest.py 5 additions, 15 deletionsapp/tests/conftest.py
- app/tests/mocks/authorization_service.py 45 additions, 0 deletionsapp/tests/mocks/authorization_service.py
- app/tests/mocks/slurm_cluster.py 22 additions, 0 deletionsapp/tests/mocks/slurm_cluster.py
- app/tests/utils/utils.py 21 additions, 11 deletionsapp/tests/utils/utils.py
- mako_templates/config_template.config.template 0 additions, 0 deletionsmako_templates/config_template.config.template
- mako_templates/nextflow_command.template 3 additions, 0 deletionsmako_templates/nextflow_command.template
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