Resolve "Update clowmdb to 3"

.gitlab-ci.yml

.pre-commit-config.yaml

Dockerfile

Dockerfile-Gunicorn

README.md

app/api/background_tasks/__init__.py

app/api/background_tasks/background.py

app/api/background_tasks/cluster_utils.py

app/api/dependencies.py

app/api/endpoints/workflow.py

app/api/endpoints/workflow_credentials.py

app/api/endpoints/workflow_execution.py

app/api/endpoints/workflow_mode.py

app/api/endpoints/workflow_version.py

app/api/middleware/etagmiddleware.py

app/api/utils.py

app/core/security.py

app/crud/crud_bucket.py

app/crud/crud_user.py

app/crud/crud_workflow.py