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AGGI Projects

This group contains all research related projects of AGGI

  • ANGeSpy3
    ANGeSpy3

    A port of ANGeS to Python 3

    0
  • ANGORA
    ANGORA

    ANcestral reconstruction by local GenOme Rearrangement Analysis

    0
  • C
    corer
    0
  • DING
    DING

    DCJ-indel of natural genomes

    1
  • ding-cf
    ding-cf
    0
  • D
    dingIIofficial

    The python 3 Version of DING.

    1
  • FFGC
    FFGC

    Family Free Genome Comparison (FFGC) is a self-contained workflow system that provides functionality for all steps of a family-free gene order analysis starting from annotated genome sequences.

    0
  • F
    ffs-dcj
    0
  • Gecko3-DCJ
    Gecko3-DCJ

    Gecko3-DCJ is an extension of Gecko 3, which finds approximate gene clusters supporting structural similarity analysis by means of the local DCJ similarity.

    0
  • GEESE
    GEESE

    An efficient parallel implementation for GEnomE SEgmentation

    0
  • gen-diff
    gen-diff

    DIFF: Genomic Distance in the Family-Free Setting

    0
  • Halving Natural Genomes
    Halving Natural Genomes

    Halving natural genomes.

    0
  • L
    LASTZ hotfix

    LASTZ - pairwise DNA sequence aligner (v. 1.04.00-hotfix)

    0
  • M
    MinEncCanKmer

    Minimal encoding of canonical k-mers

    0
  • P
    pangrowth
    2
  • P
    ParaC

    220 ParaC genomes. Enterobase snapshot from 02/2019 published in [Zhou et al., Genome Research, 2018].

    0
  • P
    PLAST

    Pangenome Local Alignment Search Tool

    0
  • RATS
    RATS
    1
  • S
    Salmonella enterica

    2964 Salmonella enterica genomes. Enterobase snapshot from 02/2019 published in [Zhou et al., Current Biology, 2018].

    0
  • SANS
    SANS

    Symmetric Alignment-free phylogeNomic Splits

    3