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Created with Raphaël 2.2.027Sep252120152Aug25Jul201814131221Jun20762131May3027Mar20Feb17151476130Jan2619181365423Dec222119161514139723Nov181716109226Oct2524212018171413121110765428Sep27262131Aug30292524181716119update requirementsfeature/hydra_c…feature/hydra_configfix loading of files with erroneous spacing between slicesadd script to animate the difference between a real and a fake mu mapadd script to print the best and worst run of a random searchadd visualization for image registrationadd normalization to parallel trainingadapt params and transfer model to device for parallel trainingsplit script now works with arbitrary csv filesadd structures for parallel trainingmake file loading and conversion between nrrd and dicom more robustMerge branch 'feature/hydra_config' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map into feature/hydra_configcompute_mu_map can now write the computed mu map to file without a reference filecreate_empty_dicom now adds the DICOM preamble and update_dcm_image has the optional spacing parameterconversion from dicom to nrrd now only sets origin and direction if according DICOM fields are availableadd new preparation scriptresolve merge conflictsdicom time util is more robust if time field is missingmainmainupdate label outliers scriptformatting and change util script to be able to load directories as symlinkseval.random_search.outlier allows to set the random search dir and is robust to unavailable parameter valuesupdate label_outliers script to print the average NMAEadd sbatch files used for slurm to gitignoreupdate gitignorefix usage of custom random search dir in oulier labelingmerge (gitignore)fix that random_search can user other datasetstry introducing dataset dir to cgan random searchupdate gitignoreadd scatter correction as a random search param to be evaluateMerge branch 'main' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-mapmu_map/random_search/eval/params.py allows the evaluation of multiple params with the same calladd all cgan_random_search dirs to gitignorechange create_gif.py behaviour to not loop per defaultcgan random search now includes scatter correction as a parameterMerge branch 'main' into feature/hydra_configadd roi command to create_gifadd script to create a gif from 3d imagesadd script to compute a single mu mapupdate osem reconstructionconversion to dicom changes UID