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Tamino Huxohl
mu-map
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769eb560eb66588abe19dcf424a0d7b3e40ecced
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feature/hydra_config
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update requirements
feature/hydra_c…
feature/hydra_config
fix loading of files with erroneous spacing between slices
add script to animate the difference between a real and a fake mu map
add script to print the best and worst run of a random search
add visualization for image registration
add normalization to parallel training
adapt params and transfer model to device for parallel training
split script now works with arbitrary csv files
add structures for parallel training
make file loading and conversion between nrrd and dicom more robust
Merge branch 'feature/hydra_config' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map into feature/hydra_config
compute_mu_map can now write the computed mu map to file without a reference file
create_empty_dicom now adds the DICOM preamble and update_dcm_image has the optional spacing parameter
conversion from dicom to nrrd now only sets origin and direction if according DICOM fields are available
add new preparation script
resolve merge conflicts
dicom time util is more robust if time field is missing
main
main
update label outliers script
formatting and change util script to be able to load directories as symlinks
eval.random_search.outlier allows to set the random search dir and is robust to unavailable parameter values
update label_outliers script to print the average NMAE
add sbatch files used for slurm to gitignore
update gitignore
fix usage of custom random search dir in oulier labeling
merge (gitignore)
fix that random_search can user other datasets
try introducing dataset dir to cgan random search
update gitignore
add scatter correction as a random search param to be evaluate
Merge branch 'main' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map
mu_map/random_search/eval/params.py allows the evaluation of multiple params with the same call
add all cgan_random_search dirs to gitignore
change create_gif.py behaviour to not loop per default
cgan random search now includes scatter correction as a parameter
Merge branch 'main' into feature/hydra_config
add roi command to create_gif
add script to create a gif from 3d images
add script to compute a single mu map
update osem reconstruction
conversion to dicom changes UID
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