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Commit 50bd5abb authored by Daniel Göbel's avatar Daniel Göbel
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Resolve "Add UI for viewing and managing Resources"

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1 merge request!85Resolve "Add UI for viewing and managing Resources"
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Dockerfile
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# build stage
FROM gitlab.ub.uni-bielefeld.de/cmg/clowm/dependency_proxy/containers/node:18 as build-stage
FROM node:18 as build-stage
WORKDIR /app
COPY package.json ./
COPY package-lock.json ./
......@@ -8,10 +8,11 @@ COPY . .
RUN npm run build-only
# production stage
FROM gitlab.ub.uni-bielefeld.de/cmg/clowm/dependency_proxy/containers/nginx:stable-alpine as production-stage
FROM nginx:stable-alpine as production-stage
EXPOSE 80
HEALTHCHECK --interval=30s --timeout=4s CMD curl --head -f http://localhost || exit 1
COPY --from=build-stage /app/dist /usr/share/nginx/html
COPY --from=build-stage /app/src/assets/env.template.js /tmp
COPY nginx.conf /etc/nginx/conf.d/default.conf
EXPOSE 80
CMD ["/bin/sh", "-c", "envsubst < /tmp/env.template.js > /usr/share/nginx/html/env.js && exec nginx -g 'daemon off;'"]
LICENSE 0 → 100644
+ 202
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README.md
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......@@ -14,6 +14,11 @@ When accessing the website, these variables will be loaded dynamically into the
|-------------------------|---------|----------|--------------------------------------------------|
| `AUTH_API_BASE_URL` | unset | HTTP URL | Base URL for the Auth Service API |
| `WORKFLOW_API_BASE_URL` | unset | HTTP URL | Base URL for the Workflow Service API |
| `RESOURCE_API_BASE_URL` | unset | HTTP URL | Base URL for the Resource Service API |
| `S3PROXY_API_BASE_URL` | unset | HTTP URL | Base URL for the S3Proxy Service API |
| `S3_URL` | unset | HTTP URL | URL of the S3 storage to interact with |
| `DEV_SYSTEM` | `false` | boolean | Flag if the service is installed on a Dev system |
## License
The API is licensed under the [Apache 2.0](https://www.apache.org/licenses/LICENSE-2.0) license. See the [License](LICENSE) file for more information
index.html
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<!DOCTYPE html>
<html lang="en" data-bs-theme="light">
<head>
<meta charset="UTF-8" />
<link rel="icon" href="/favicon.ico" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>CloWM</title>
<head>
<meta charset="UTF-8"/>
<link rel="icon" href="/favicon.ico"/>
<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<title>CloWM - Cloud-based Workflow Manager</title>
<meta name="description" content="The Cloud-based Workflow Manager (CloWM) is a service hosted at Bielefeld University that can transform your Nextflow workflow into a public webservice and provide compute and storage resources for executing your registered workflow"/>
<script src="/env.js"></script>
</head>
<body>
<div id="app" class="d-flex flex-column justify-content-between" style="min-height: 100vh"></div>
<script type="module" src="/src/main.ts"></script>
</body>
</head>
<body>
<div id="app" class="d-flex flex-column justify-content-between" style="min-height: 100vh"></div>
<script type="module" src="/src/main.ts"></script>
</body>
</html>
package-lock.json
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package.json
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{
"name": "clowm-ui",
"version": "2.0.0",
"type": "module",
"license": "Apache-2.0",
"scripts": {
"dev": "vite",
"build": "run-p type-check build-only",
......@@ -10,7 +12,8 @@
"lint": "eslint . --ext .vue,.js,.jsx,.cjs,.mjs,.ts,.tsx,.cts,.mts --fix --ignore-path .gitignore",
"generate-s3-client": "openapi --input http://localhost:9999/api/s3proxy-service/openapi.json --output src/client/s3proxy --client axios",
"generate-auth-client": "openapi --input http://localhost:9999/api/auth-service/openapi.json --output src/client/auth --client axios",
"generate-workflow-client": "openapi --input http://localhost:9999/api/workflow-service/openapi.json --output src/client/workflow --client axios"
"generate-workflow-client": "openapi --input http://localhost:9999/api/workflow-service/openapi.json --output src/client/workflow --client axios",
"generate-resource-client": "openapi --input http://localhost:9999/api/resource-service/openapi.json --output src/client/resource --client axios"
},
"dependencies": {
"@aws-sdk/client-s3": "^3.440.0",
......@@ -19,44 +22,45 @@
"@fortawesome/fontawesome-free": "~6.4.2",
"@popperjs/core": "~2.11.8",
"ajv": "~8.12.0",
"bootstrap": "~5.3.1",
"chart.js": "~4.3.3",
"bootstrap": "~5.3.0",
"chart.js": "~4.4.0",
"chartjs-plugin-zoom": "~2.0.1",
"dayjs": "~1.11.9",
"dayjs": "~1.11.0",
"dompurify": "~3.0.5",
"filesize": "~10.0.12",
"idb-keyval": "^6.2.1",
"pinia": "~2.1.6",
"semver": "~7.5.4",
"pinia": "~2.1.0",
"semver": "~7.5.0",
"showdown": "~2.1.0",
"vue": "~3.3.4",
"vue-router": "~4.2.4",
"vue3-cookies": "~1.0.6"
"vue": "~3.4.0",
"vue-router": "~4.2.0",
"vue3-cookies": "~1.0.0"
},
"devDependencies": {
"@esbuild-plugins/node-globals-polyfill": "~0.2.3",
"@esbuild-plugins/node-modules-polyfill": "~0.2.2",
"@rushstack/eslint-patch": "~1.2.0",
"@tsconfig/node18": "^18.2.1",
"@types/bootstrap": "~5.2.6",
"@types/dompurify": "~3.0.2",
"@types/node": "^16.18.48",
"@types/bootstrap": "~5.2.0",
"@types/dompurify": "~3.0.0",
"@types/node": "^18.19.5",
"@types/semver": "~7.5.1",
"@types/showdown": "~2.0.1",
"@vitejs/plugin-vue": "~4.3.4",
"@vitejs/plugin-vue": "~5.0.0",
"@vue/eslint-config-prettier": "~8.0.0",
"@vue/eslint-config-typescript": "~11.0.3",
"@vue/tsconfig": "~0.4.0",
"@vue/tsconfig": "~0.5.0",
"axios": "~1.6.0",
"eslint": "~8.48.0",
"eslint-plugin-vue": "~9.17.0",
"eslint-plugin-vue": "~9.19.0",
"highlight.js": "^11.9.0",
"npm-run-all": "~4.1.5",
"openapi-typescript-codegen": "^0.25.0",
"openapi-typescript-codegen": "^0.26.0",
"prettier": "~3.0.3",
"rollup-plugin-node-polyfills": "~0.2.1",
"sass": "~1.66.1",
"typescript": "~5.1.6",
"vite": "~4.4.9",
"vue-tsc": "~1.8.10"
"vite": "~5.0.0",
"vue-tsc": "~1.8.0"
}
}
public/robots.txt 0 → 100644
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User-agent: *
Disallow: /dashboard
Allow: /login
src/App.vue
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......@@ -7,18 +7,22 @@ import { useRouter } from "vue-router";
import { OpenAPI as S3ProxyOpenAPI } from "@/client/s3proxy";
import { OpenAPI as AuthOpenAPI } from "@/client/auth";
import { OpenAPI as WorkflowOpenAPI } from "@/client/workflow";
import { OpenAPI as ResourceOpenAPI } from "@/client/resource";
import { environment } from "@/environment";
import FooterBottom from "@/components/FooterBottom.vue";
import axios from "axios";
import { useNameStore } from "@/stores/names";
const { cookies } = useCookies();
const store = useAuthStore();
const router = useRouter();
const nameRepository = useNameStore();
onBeforeMount(() => {
S3ProxyOpenAPI.BASE = environment.S3PROXY_API_BASE_URL;
AuthOpenAPI.BASE = environment.AUTH_API_BASE_URL;
WorkflowOpenAPI.BASE = environment.WORKFLOW_API_BASE_URL;
ResourceOpenAPI.BASE = environment.RESOURCE_API_BASE_URL;
axios.interceptors.response.use(
(res) => res,
(err) => {
......@@ -56,20 +60,36 @@ onBeforeMount(() => {
return { name: "dashboard" };
} else if (
to.meta.requiresReviewerRole &&
!(store.workflowReviewer || store.admin)
!(store.rewiewer || store.admin)
) {
return { name: "dashboard" };
} else if (
to.meta.requiresMaintainerRole &&
!(store.resourceMaintainer || store.admin)
) {
return { name: "dashboard" };
} else if (to.meta.adminRole && !store.admin) {
return { name: "dashboard" };
}
});
nameRepository.loadNameMapping();
});
</script>
<template>
<NavbarTop />
<div class="container-xxl mt-4 flex-grow-1">
<div
id="global-toast-container"
class="toast-container position-fixed top-toast end-0 p-3"
></div>
<router-view></router-view>
</div>
<FooterBottom />
</template>
<style scoped></style>
<style scoped>
.top-toast {
top: 4rem;
}
</style>
src/assets/env.template.js
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......@@ -6,5 +6,6 @@
window["env"]["workflowApiUrl"] = "${WORKFLOW_API_BASE_URL}";
window["env"]["s3proxyApiUrl"] = "${S3PROXY_API_BASE_URL}";
window["env"]["authApiUrl"] = "${AUTH_API_BASE_URL}";
window["env"]["resourceApiUrl"] = "${RESOURCE_API_BASE_URL}";
window["env"]["devSystem"] = "${DEV_SYSTEM}";
})(this);
src/assets/main.css
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@import "base.css";
@import "highlight.js/styles/default.min.css";
.fs-0 {
font-size: 3.5rem;
}
.top-toast {
top: 4rem;
}
.w-fit {
width: fit-content;
}
......@@ -32,3 +29,7 @@ pre {
transform: translateY(-2px);
backdrop-filter: brightness(0.95);
}
.hover-info:hover {
color: var(--bs-info) !important;
}
src/client/auth/core/CancelablePromise.ts
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......@@ -51,7 +51,7 @@ export class CancelablePromise<T> implements Promise<T> {
return;
}
this.#isResolved = true;
this.#resolve?.(value);
if (this.#resolve) this.#resolve(value);
};
const onReject = (reason?: any): void => {
......@@ -59,7 +59,7 @@ export class CancelablePromise<T> implements Promise<T> {
return;
}
this.#isRejected = true;
this.#reject?.(reason);
if (this.#reject) this.#reject(reason);
};
const onCancel = (cancelHandler: () => void): void => {
......@@ -122,7 +122,7 @@ export class CancelablePromise<T> implements Promise<T> {
}
}
this.#cancelHandlers.length = 0;
this.#reject?.(new CancelError('Request aborted'));
if (this.#reject) this.#reject(new CancelError('Request aborted'));
}
public get isCancelled(): boolean {
......
src/client/auth/core/request.ts
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......@@ -145,10 +145,13 @@ export const resolve = async <T>(options: ApiRequestOptions, resolver?: T | Reso
};
export const getHeaders = async (config: OpenAPIConfig, options: ApiRequestOptions, formData?: FormData): Promise<Record<string, string>> => {
const token = await resolve(options, config.TOKEN);
const username = await resolve(options, config.USERNAME);
const password = await resolve(options, config.PASSWORD);
const additionalHeaders = await resolve(options, config.HEADERS);
const [token, username, password, additionalHeaders] = await Promise.all([
resolve(options, config.TOKEN),
resolve(options, config.USERNAME),
resolve(options, config.PASSWORD),
resolve(options, config.HEADERS),
]);
const formHeaders = typeof formData?.getHeaders === 'function' && formData?.getHeaders() || {}
const headers = Object.entries({
......
src/client/auth/models/ErrorDetail.ts
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− 1
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......@@ -2,7 +2,6 @@
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
/**
* Schema for a error due to a rejected request.
*/
......
src/client/auth/models/HTTPValidationError.ts
+ 0
− 2
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......@@ -2,9 +2,7 @@
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
import type { ValidationError } from './ValidationError';
export type HTTPValidationError = {
detail?: Array<ValidationError>;
};
......
src/client/auth/models/RoleEnum.ts
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− 1
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......@@ -2,7 +2,6 @@
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
/**
* Enumeration for the Roles in the CloWM Services.
*/
......@@ -12,4 +11,5 @@ export enum RoleEnum {
REVIEWER = 'reviewer',
DEVELOPER = 'developer',
FOREIGN_USER = 'foreign_user',
DB_MAINTAINER = 'db_maintainer',
}
src/client/auth/models/User.ts
+ 0
− 2
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......@@ -2,9 +2,7 @@
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
import type { RoleEnum } from './RoleEnum';
/**
* Schema for a user.
*/
......
src/client/auth/models/ValidationError.ts
+ 0
− 1
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......@@ -2,7 +2,6 @@
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
export type ValidationError = {
loc: Array<(string | number)>;
msg: string;
......
src/client/auth/services/AuthService.ts
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− 4
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......@@ -5,9 +5,7 @@
import type { CancelablePromise } from '../core/CancelablePromise';
import { OpenAPI } from '../core/OpenAPI';
import { request as __request } from '../core/request';
export class AuthService {
/**
* Redirect to LifeScience OIDC Login
* Redirect route to OIDC provider to kickstart the login process.
......@@ -23,7 +21,6 @@ export class AuthService {
},
});
}
/**
* LifeScience Login Callback
* Callback for the Life Science Identity Provider.
......@@ -48,5 +45,4 @@ export class AuthService {
},
});
}
}
src/client/auth/services/UserService.ts
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src/client/resource/core/ApiError.ts 0 → 100644
+ 25
− 0
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/* generated using openapi-typescript-codegen -- do no edit */
/* istanbul ignore file */
/* tslint:disable */
/* eslint-disable */
import type { ApiRequestOptions } from './ApiRequestOptions';
import type { ApiResult } from './ApiResult';
export class ApiError extends Error {
public readonly url: string;
public readonly status: number;
public readonly statusText: string;
public readonly body: any;
public readonly request: ApiRequestOptions;
constructor(request: ApiRequestOptions, response: ApiResult, message: string) {
super(message);
this.name = 'ApiError';
this.url = response.url;
this.status = response.status;
this.statusText = response.statusText;
this.body = response.body;
this.request = request;
}
}
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