Skip to content
Snippets Groups Projects
Commit 9390035e authored by Diego Rubert's avatar Diego Rubert
Browse files

Initial commit

parents
No related branches found
No related tags found
No related merge requests found
Showing
with 68 additions and 0 deletions
LICENSE 0 → 100644
MIT License
Copyright (c) 2007-2017 Robert S. Harris
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Makefile 0 → 100644
include make-include.mak
default: build_lastz
lastz_32: build_lastz_32
#---------
# builds/installation
#---------
build: build_lastz
build_lastz:
cd src && ${MAKE} lastz lastz_D
build_lastz_32:
cd src && ${MAKE} lastz_32
build_test_version:
cd src && ${MAKE} lastz-test lastz_D-test
clean:
cd src && ${MAKE} clean
install: install_lastz
install_lastz:
cd src && ${MAKE} install
install_32:
cd src && ${MAKE} install_32
install_test_version:
cd src && ${MAKE} install_test_version
#---------
# testing
#
# Small tests to give some comfort level that the program has built properly,
# or that changes you've made to the source code haven't broken it. The
# results should be of this form:
# SUCCESS: ../test_data/xxx and ../test_results/yyy are equivalent
#---------
test:
cd src && ${MAKE} test
This diff is collapsed.
This diff is collapsed.
images/after_chaining.png

5.54 KiB

images/after_interpolation.png

6.25 KiB

images/aglobin_chained.png

5.63 KiB

images/aglobin_closeup_gapped.png

9.98 KiB

images/aglobin_closeup_hsps.png

8.44 KiB

images/aglobin_closeup_seeds.png

9.16 KiB

images/aglobin_hsps.png

5.93 KiB

images/aglobin_unchained.png

7.14 KiB

images/anchors_and_alignment.png

11.5 KiB

images/before_chaining.png

8.84 KiB

images/before_interpolation.png

5.12 KiB

images/human_vs_chicken.png

7.5 KiB

images/human_vs_chicken_full.png

8.79 KiB

images/seeds_and_hsps.png

11.7 KiB

images/seq_vs_same.png

10.5 KiB

images/seq_vs_same_notrivial.png

8.69 KiB

0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment