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Created with Raphaël 2.2.031May3026232219161521Apr27Feb109323Jan1Aug28Jun272415change build directorymavenmavenadd external jars to pom.xmlremove ant project dataadd pom.xmladd maven files to gitignoreset up maven project structuremove methods to separate gui related code from cli codesepGUIsepGUIupdate Readmemainmainrename getterfix bug with wrong grey leaves countedit READMEMerge branch 'update'fix bug with incorrect recognition of component IV orientationadd license fileadd missing word in sentence in READMEupdate contracted component treethrow exception for invalid zip filesset max file count on 100catch InputOutputExceptionupdate cmd help pageupdate help pageadd javadoc and some minor changesadd licence and some minor changes in READMEupdate contracted component treethrow exception for invalid zip filesset max file count on 100update Readmeadd Readme without license partcatch InputOutputExceptionupdate cmd help pageupdate help pageadd javadoc and some minor changesremove manifest.mfupdate AdjacencyGraphTestupdate UtilitiesTestupdate Chromosomeupdate Constantsupdate Genomeadd ContractedCompTreeTestupdate DistanceTest