Commits · 8e0a76c4e1fa738e8f63e69f9c5593624ca59ec1 · Tamino Huxohl / mu-map · GitLab

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Dec 22, 2022
- refactor interfile module · 8e0a76c4
  Tamino Huxohl authored 2 years ago
  
  8e0a76c4
- update everything to use key from InterfileKeys class now · e536c7b3
  Tamino Huxohl authored 2 years ago
  
  e536c7b3
- implement transformer between numpy and torch format · baf323fd
  Tamino Huxohl authored 2 years ago
  
  baf323fd
Dec 21, 2022
- remove outdated scale transform and refactor to support variable number of tensors · 291180a0
  Tamino Huxohl authored 2 years ago
  
  291180a0
- eval dataset_sets now also prints protocols by patient · fe448f7a
  Tamino Huxohl authored 2 years ago
  
  fe448f7a
- slight changes to test script for visulization · 4d245893
  Tamino Huxohl authored 2 years ago
  
  4d245893
- remove unnecessary scaling from mock dataset · 8dc049f8
  Tamino Huxohl authored 2 years ago
  
  8dc049f8
Dec 19, 2022
- extends dataset stats printing · 41a344dd
  Tamino Huxohl authored 2 years ago
  
  41a344dd
- patient position is now also extracted from the data · 82ff4266
  Tamino Huxohl authored 2 years ago
  
  82ff4266
Dec 16, 2022
- fix format specifier in snapshot storing · bb734f77
  Tamino Huxohl authored 2 years ago
  
  bb734f77
- fix call to store_snapshot · 42a1436a
  Tamino Huxohl authored 2 years ago
  
  42a1436a
- fix l1 loss usage · 97a7518f
  Tamino Huxohl authored 2 years ago
  
  97a7518f
- fix another bug in eval method · 08480c2a
  Tamino Huxohl authored 2 years ago
  
  08480c2a
- eval_epoch no longer requires the phase argument · 2da7d4f2
  Tamino Huxohl authored 2 years ago
  
  2da7d4f2
- distance training moves model to correct device · 2f7abaaa
  Tamino Huxohl authored 2 years ago
  
  2f7abaaa
- rename default training into distance training and fix issues with usage as abstract training · 837a67db
  Tamino Huxohl authored 2 years ago
  
  837a67db
Dec 15, 2022
- add script to evaluate patient statistics · bda67c1e
  Tamino Huxohl authored 2 years ago
  
  bda67c1e
- include correlation coefficient in pixelwise evaluation · c6daae5f
  Tamino Huxohl authored 2 years ago
  
  c6daae5f
- add missing training lib module · 7bf09ddd
  Tamino Huxohl authored 2 years ago
  
  7bf09ddd
Dec 14, 2022
- move function of data/dicom_util to file/dicom · e0d463db
  Tamino Huxohl authored 2 years ago
  
  e0d463db
- add parsing patient's sex in prepare script · 47350717
  Tamino Huxohl authored 2 years ago
  
  47350717
Dec 13, 2022
- add custom color map to visualization script · d60208df
  Tamino Huxohl authored 2 years ago
  
  d60208df
- add bland altman plot to perfusion evaluation · 32eabd9b
  Tamino Huxohl authored 2 years ago
  
  32eabd9b
- add capability to a dump a dicom header to dicom module · c3db3b18
  Tamino Huxohl authored 2 years ago
  
  c3db3b18
Dec 09, 2022
- add script for pixel-wise polarmap evaluation · c93101a0
  Tamino Huxohl authored 2 years ago
  
  c93101a0
- move polar map scripts to a new model and add more · a51438ad
  Tamino Huxohl authored 2 years ago
  
  a51438ad
Dec 07, 2022
- update training code · ce73746b
  Tamino Huxohl authored 2 years ago
  
  ce73746b
- update values in polar map scripts · 79d54434
  Tamino Huxohl authored 2 years ago
  
  79d54434
- Merge branch 'main' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map · 9800f0b3
  Tamino Huxohl authored 2 years ago
  
  9800f0b3
- introduce custom dicom filetype and make scaling of images optional · 8e4437bb
  Tamino Huxohl authored 2 years ago
  
  8e4437bb
- Merge branch 'main' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map · a39d7b07
  Tamino Huxohl authored 2 years ago
  
  a39d7b07
- remove tomolab reconstruction · 7966db83
  Tamino Huxohl authored 2 years ago
  
  7966db83
- dicom util uses reandom instead of time for id creation · 9d8618e2
  Tamino Huxohl authored 2 years ago
  
  9d8618e2
Nov 23, 2022
- fix filename storing in prepare_polar_maps · c2d5166e
  Tamino Huxohl authored 2 years ago
  
  c2d5166e
- add script to extract perfusion values from polar maps · 24983eb3
  Tamino Huxohl authored 2 years ago
  
  24983eb3
- Merge branch 'main' of https://gitlab.ub.uni-bielefeld.de/thuxohl/mu-map · 404b8d0f
  Tamino Huxohl authored 2 years ago
  
  404b8d0f
- add script to extract polar maps from dicom images · 4e72bfee
  Tamino Huxohl authored 2 years ago
  
  4e72bfee
Nov 18, 2022
- rename recon module to osem and add postfilter support · 00c4956e
  Tamino Huxohl authored 2 years ago
  
  00c4956e
- add module for filter applied to the reconstruction · 8fb2b79b
  Tamino Huxohl authored 2 years ago
  
  8fb2b79b
- add keys class to interfile module · 5517a6e4
  Tamino Huxohl authored 2 years ago
  
  5517a6e4